/* Shared analysis forms: standalone tools, workflows and viewer launchers.
   Keep common controls together and scope geometry exceptions to components. */

/* À la carte keeps the form geometry of the historical CGI. */
.alacarte-setup-form {
  margin: 0;
}
.alacarte-setup-form #id_workflow_name {
  width: 365px;
  max-width: calc(100% - 8px);
  box-sizing: border-box;
}
.alacarte-name-label,
.alacarte-method-heading,
.alacarte-methods label,
.alacarte-run-options label {
  color: #bb8000;
}
.alacarte-stage-group {
  margin-right: 24px;
  border: 1px dashed #808080;
}
.alacarte-setup-form label {
  display: inline;
  font: inherit;
  margin: 0;
}
.alacarte-additional-methods {
  margin: 16px 24px 0 0;
}
.alacarte-additional-methods summary {
  color: #006699;
  cursor: pointer;
}
.alacarte-additional-methods > div {
  margin-top: 8px;
}
.alacarte-page .miniworkflow {
  display: flex;
  align-items: flex-start;
  flex-wrap: nowrap;
  min-width: 508px;
  padding-left: 16px;
  height: 56px;
}
.alacarte-page .miniworkflow > * {
  flex-shrink: 0;
}
.alacarte-page .miniworkflow [hidden] {
  display: none;
}
.alacarte-page .wf_header > table {
  min-height: 58px;
}
.alacarte-setup-form input[type="radio"],
.alacarte-setup-form input[type="checkbox"] {
  appearance: none;
  width: 13px;
  height: 13px;
  border: 0;
  background: center no-repeat;
  vertical-align: -2px;
  cursor: pointer;
}
.alacarte-setup-form input[type="radio"] { background-image: url("../images/radio.png"); }
.alacarte-setup-form input[type="radio"]:checked { background-image: url("../images/radio_checked.png"); }
.alacarte-setup-form input[type="checkbox"] { margin-bottom: 0; }
.alacarte-setup-form input[type="checkbox"] { background-image: url("../images/checkbox.png"); }
.alacarte-setup-form input[type="checkbox"]:checked { background-image: url("../images/checkbox_checked.png"); }
.alacarte-setup-form input:focus-visible {
  outline: 2px solid #006699;
  outline-offset: 2px;
}

/* Workflow boxes use the shared dimensions and stage colors, as in Advanced. */
.oneclick-form { margin-top: 30px; }
.oneclick-form .analysis-name { margin-bottom: 16px; }
.oneclick-form #id_analysis_name { width: 360px; max-width: 70vw; }
.oneclick-form #id_alignment_text { width: 575px; max-width: calc(100vw - 70px); height: 230px; vertical-align: middle; }
.oneclick-form .clear-input { margin-left: 14px; border: 2px solid #006699; background: #e1ecf0; padding: 1px 2px; font-weight: bold; }
.oneclick-form .input-limits { color: #0074a6; font-size: 11px; }
.oneclick-form .names-toggle { margin: 14px 0 20px; }
.oneclick-form .names-toggle button { border: 0; padding: 0; background: none; text-decoration: underline; color: #b57800; cursor: pointer; font: inherit; }
.oneclick-form .names-toggle table { max-width: 100%; }
.oneclick-form #id_short_names, .oneclick-form #id_long_names { max-width: 38vw; }
.oneclick-form .curation-option { margin: 18px 0; }
.oneclick-form .email-input { margin-top: 18px; }
.oneclick-form #id_email { width: 280px; max-width: 60vw; }
.oneclick-form .email-attachments { margin: 5px 0 20px 20px; color: #666; }
.oneclick-form .optional-label { color: #b57800; }
.oneclick-form .load-example { color: #008000; font-size: 11px; border: 0; background: none; padding: 0; cursor: pointer; }
.oneclick-page .oneclick-notes { margin-top: 32px; color: #0074a6; font-size: 11px; }
@media (max-width: 680px) { .oneclick-form .clear-input { display: block; margin: 6px 0; } }
.oneclick-page #page_content .oneclick-notes p,
#page_content .oneclick-page .oneclick-notes p { color: #0074a6; font-size: 11px; text-indent: 0; text-align: left; }

/* Shared label/control columns and standalone form geometry. */
.standalone-tool-page {
  --tool-label-width: 260px;
  --tool-control-width: 320px;
  --tool-column-gap: 14px;
  --tool-form-width: calc(var(--tool-label-width) + var(--tool-control-width) + var(--tool-column-gap));
}
.standalone-tool-page #page { min-width: 0; }
.standalone-tool-page .tool-title { font: bold 20px Arial, sans-serif; margin: 24px 0 20px; }
.standalone-tool-page #nav_tabs .workflow_tab { background: #e1ecf0; }
.standalone-tool-page #nav_tabs .workflow_tab a { background: transparent; color: #006699; }
.standalone-tool-page #nav_tabs .result_tab[aria-disabled] { color: #777; background: #ccc; }
.standalone-tool-page .legacy-form { margin: 20px 0 24px; }
.standalone-tool-page .legacy-form-section { border: 0; background: none; padding: 0; margin: 24px 0; }
.standalone-tool-page .legacy-form-section h2 { margin: 0 0 18px; }
.standalone-tool-page .legacy-form label { display: inline; font: inherit; margin: 0; }
.standalone-tool-page .legacy-note { background: none; border: 0; padding: 0; max-width: 760px; }
.standalone-tool-page #page_content p { text-align: left; text-indent: 0; }
.standalone-tool-page .form-help { line-height: 1.45; max-width: 760px; overflow-wrap: anywhere; }
.standalone-tool-page .tool-options { margin: 10px 0; }

/* The same label/control columns are used by explicit and generated forms. */
.standalone-tool-page .tool-option {
  display: grid;
  grid-template-columns: var(--tool-label-width) minmax(0, var(--tool-control-width));
  align-items: start;
  gap: 6px var(--tool-column-gap);
  margin: 10px 0;
  padding: 0;
  max-width: var(--tool-form-width);
}
.standalone-tool-page .tool-option > label,
.standalone-tool-page .tool-label { margin: 0; padding-top: 3px; line-height: 1.35; }
.standalone-tool-page .tool-control { min-width: 0; }
.standalone-tool-page .tool-control > :where(input:not([type="checkbox"]):not([type="radio"]):not([type="hidden"]):not([type="color"]):not([type="range"]), select) {
  width: 100%;
  min-width: 0;
  max-width: 100%;
  box-sizing: border-box;
  min-height: 24px;
}
/* Give native email/number/search widgets the same border as legacy text fields.
   Low specificity preserves readonly, disabled and focus states. */
.standalone-tool-page :where(.tool-control) > :where(input[type="text"], input[type="email"], input[type="number"], input[type="search"]) {
  border: 2px inset;
  border-color: #006699 #00334c #00334c #006699;
  padding: 2px 2px 1px;
  font: 13px Arial, sans-serif;
}
.standalone-tool-page .tool-control > input[type="number"],
.standalone-tool-page .tool-inline-control input[type="number"] { width: 80px; max-width: 100%; box-sizing: border-box; min-height: 24px; }
.standalone-tool-page .tool-option .errorlist { margin: 4px 0 0; padding-left: 18px; color: #8a2b2b; }
.standalone-tool-page .tool-option .form-help { margin: 2px 0 0; }
.standalone-tool-page .tool-checkbox-single > label,
.standalone-tool-page .tool-checkbox-single > .tool-control { grid-column: 1 / -1; }
.standalone-tool-page .tool-checkbox-single > .tool-control { padding-left: 20px; }
.standalone-tool-page .tool-control:empty { display: none; }
.standalone-tool-page .tool-inline-control { display: flex; flex-wrap: wrap; align-items: center; gap: 6px 10px; }
.standalone-tool-page .tool-dependent-control { margin-top: 8px; }
.standalone-tool-page .tool-checkbox-option > label,
.standalone-tool-page .tool-choice-option .tool-control label { display: flex; align-items: baseline; gap: 6px; }
.standalone-tool-page .tool-choice-option .tool-control > div > div + div { margin-top: 8px; }
.standalone-tool-page .tool-control > input[type="range"],
.standalone-tool-page .tool-control > input[type="color"] { margin: 0; max-width: 100%; }
.standalone-tool-page .tool-option input[type="checkbox"],
.standalone-tool-page .tool-option input[type="radio"] { flex-shrink: 0; margin: 0; }

/* Sequence/tree input remains above its textarea, rather than in a narrow column. */
.standalone-tool-page .tool-input { grid-template-columns: minmax(0, 1fr); margin: 16px 0; }
.standalone-tool-page .tool-input textarea,
.standalone-tool-page .legacy-form textarea { display: block; width: 583px; max-width: 100%; height: 233px; box-sizing: border-box; }
.standalone-tool-page .tool-input-compact textarea { height: 155px; }
.standalone-tool-page .tool-input input[type="file"] { width: auto; }
.standalone-tool-page .tool-choice-group { border: 0; padding: 0; min-width: 0; margin: 20px 0; }
.standalone-tool-page .tool-choice-group legend { padding: 0; margin-bottom: 8px; }
.standalone-tool-page .tool-choice-group > div > div { margin: 8px 0; }
.standalone-tool-page .toggle-link { padding: 0; }
.standalone-tool-page .toggle-link::before { content: '▸ '; text-decoration: none; }
.standalone-tool-page .toggle-link[aria-expanded="true"]::before { content: '▾ '; }
.standalone-tool-page .legacy-form-actions { display: flex; flex-wrap: wrap; gap: 8px; }
.standalone-tool-page .legacy-form button[type="submit"],
.standalone-tool-page .legacy-form button[type="reset"] {
  padding: 2px 6px;
  border: 2px outset #006699;
  background: #e0ebf0;
  color: #000;
  font: bold 13px Arial, sans-serif;
}

/* Historical shared input toolbar and name-association columns. */
.phyml-tool-form .tool-datatype { margin: 0 0 20px; }
.phyml-tool-form #id_sequence_type { display: flex; flex-wrap: wrap; gap: 8px 20px; }
.standalone-tool-page .tool-input-area,
.workflow-form-page .workflow-input-area { display: flex; align-items: center; gap: 16px; }
.standalone-tool-page .tool-input-area button { border: 2px solid #006699; background: #e1ecf0; padding: 1px 2px; font-weight: bold; }
.standalone-tool-page .load-example { color: green; font: 11px 'Times New Roman', serif; border: 0; background: none; padding: 0; cursor: pointer; }
.standalone-tool-page .tool-names-toggle { margin: 24px 0 46px; }
.standalone-tool-page .tool-names-toggle button { color: #b57800; font: inherit; }
.standalone-tool-page .tool-name-columns,
.workflow-form-page .workflow-name-columns { display: flex; gap: 14px; flex-wrap: wrap; }
.standalone-tool-page #id_short_names { width: 180px; height: 155px; }
.standalone-tool-page #id_long_names { width: 400px; height: 155px; }
.phyml-tool-form .tool-settings h2 { margin: 0 0 20px; }
.phyml-tool-form .tool-model { margin: 20px 0 30px; }
.phyml-tool-form .tool-advanced-toggle { margin: 26px 0 22px; font-weight: bold; }
.standalone-tool-page .tool-notifications { margin: 26px 0 22px; }
.standalone-tool-page .tool-notifications p { margin: 0 0 12px; }

/* BLAST-specific guidance; its fields use the common columns above. */
.blast-ncbi-note { max-width: 760px; padding: 10px 12px; border-left: 3px solid #006699; background: #eef5f8; line-height: 1.5; }

@media (max-width: 680px) {
  .standalone-tool-page .tool-option { grid-template-columns: minmax(0, 1fr); gap: 5px; margin: 14px 0; }
  .standalone-tool-page .tool-option > label,
  .standalone-tool-page .tool-label { padding-top: 0; }
  .standalone-tool-page .tool-input-area { flex-wrap: wrap; }
  .standalone-tool-page .tool-name-columns > div { max-width: 100%; }
}

.standalone-tool-page .tool-sequence-input > .tool-input { margin: 0; }
.standalone-tool-page .tool-sequence-input .tool-input-area { width: min(100%, 660px); }
.standalone-tool-page .tool-sequence-input textarea { flex: 0 1 583px; min-width: 0; }
.standalone-tool-page .tool-sequence-input .tool-input-area button { flex: 0 0 auto; }
.standalone-tool-page .tool-datatype > div,
.workflow-form-page .workflow-datatype > div { display: flex; flex-wrap: wrap; gap: 8px 20px; }
.standalone-tool-page .tool-settings { margin: 28px 0; }
.standalone-tool-page .tool-settings h2 { margin: 0 0 18px; }
.standalone-tool-page .tool-settings h3 { font: bold 14px Arial, sans-serif; color: #00415c; margin: 18px 0 8px; }
.standalone-tool-page .tool-radio-settings { border: 0; margin: 16px 0; padding: 0; }
.standalone-tool-page .tool-radio-settings > div > div { margin: 8px 0; }
.standalone-tool-page .tool-sequence-input .form-help { font-size: 12px; line-height: 1.3; }

.standalone-tool-page [data-numeric-enabled-by] input[readonly] { background: #d3d3d3; color: #555; }

/* Workflow forms follow the same field geometry as the individual programs. */
.workflow-form-page .advanced-setup-form label { display: inline; font: inherit; }
.workflow-form-page .advanced-setup-form #id_workflow_name { width: 365px; max-width: 100%; }
.workflow-form-page .advanced-run-options label { color: #bb8000; }
.workflow-form-page .advanced-setup-form { margin-bottom: 36px; }
.workflow-form-page .advanced-inline-label { font: inherit; margin-bottom: 2px; }
.workflow-form-page .advanced-form { margin-top: 24px; }
.workflow-form-page .workflow-stage-settings { margin-top: 24px; margin-bottom: 24px; }
.workflow-form-page .workflow-input-area textarea { width: 583px; max-width: 100%; }
.workflow-form-page .workflow-input-area button { border: 2px solid #006699; background: #e1ecf0; font-weight: bold; }
.workflow-form-page .workflow-phyml-settings .tool-model { margin: 20px 0; }
.workflow-form-page .workflow-phyml-settings .tool-advanced-toggle { margin: 24px 0; }
.workflow-form-page [data-workflow-parent-hidden="true"] { display: none; }
.workflow-form-page .legacy-form-grid { display: block; margin: 12px 0; }
.workflow-form-page .legacy-form-grid > div { margin: 10px 0; }
.workflow-form-page .legacy-form-grid input[type="email"] { width: 320px; max-width: 100%; }
.workflow-form-page .wf_header { overflow-x: auto; }
.workflow-form-page .wf_header > table { min-width: 730px; }
.workflow-form-page .advanced-setup-form input[type="radio"],
.workflow-form-page .advanced-setup-form input[type="checkbox"] { accent-color: #006699; }
@media (max-width: 680px) {
  .workflow-form-page .workflow-input-area { flex-wrap: wrap; }
  .workflow-form-page .advanced-names-table tr { display: flex; flex-wrap: wrap; }
  .workflow-form-page .advanced-names-table td { max-width: 100%; }
  .workflow-form-page .run-option-spacer { margin-right: 24px; }
  .workflow-form-page .advanced-setup-form #id_workflow_name { display: block; margin-top: 4px; }
}
.workflow-form-page .workflow-name-columns > div { max-width: 100%; }
.workflow-form-page .advanced-names-table textarea,
.workflow-form-page .workflow-name-columns textarea { width: 280px; height: 155px; }
.workflow-form-page .workflow-name-columns textarea { max-width: 100%; }
.workflow-form-page .workflow-name-columns label { display: block; margin-bottom: 4px; }
.workflow-form-page .workflow-datatype > div > div { margin: 0; }
.workflow-form-page .advanced-divider { margin: 20px 0; height: 0; border: 0; border-top: 1px solid #aaa; }

/* The historical viewer launch pages keep a small tree input and a plain
   settings section. The extended editor stays available below its disclosure. */
.standalone-tool-page .tool-tree-input textarea { height: 68px; }
.standalone-tool-page .viewer-launch-form .tool-names-toggle { margin-bottom: 46px; }
.standalone-tool-page .viewer-launch-form .viewer-settings { margin: 24px 0; }
.standalone-tool-page .viewer-launch-form .viewer-settings h2 { margin-bottom: 18px; }
.standalone-tool-page .viewer-launch-form .viewer-advanced-heading { margin: 22px 0; }
.standalone-tool-page .viewer-launch-form .viewer-settings > p { margin-bottom: 20px; }
.standalone-tool-page .jalview-form .tool-sequence-input textarea { height: 233px; }
.standalone-tool-page .jalview-form .legacy-form-actions { margin-top: 32px; }