/* Common page layout, navigation, accounts, notices and result status.
   Analysis controls belong in forms.css; interactive trees in atv-editor.css. */
#page_content {
  clear: both;
  min-height: 520px;
}

.account-actions {
  display: flex;
  flex-wrap: wrap;
  align-items: center;
  justify-content: flex-end;
  gap: 8px 14px;
  padding: 5px 12px;
  color: #005580;
  font: 12px Arial, Verdana, Helvetica, FreeSans, sans-serif;
}

.account-actions .account-menu {
  display: flex;
  align-items: center;
  gap: 8px;
  width: auto;
  height: 24px;
  padding: 0 6px;
  cursor: default;
}

.account-name {
  max-width: 120px;
  overflow: hidden;
  text-overflow: ellipsis;
  white-space: nowrap;
}

.account-actions .logout-form {
  margin: 0;
  line-height: normal;
  flex-shrink: 0;
}

.account-actions .logout-button {
  display: block;
  height: 20px;
  padding: 0 7px;
  border: 1px solid #c9e3ef;
  border-radius: 2px;
  background: #ffffff;
  color: #005580;
  font: inherit;
  font-weight: bold;
  line-height: 18px;
  cursor: pointer;
}

.account-actions .logout-button:hover {
  background: #e2f2fa;
  color: #003d5c;
}

.account-actions .logout-button:focus-visible {
  outline: 2px solid #005580;
  outline-offset: 1px;
}

/* Keep the eight historical entries together; account actions have their own row. */
#menu { display: flex; flex-wrap: wrap; height: auto; min-height: 24px; }
#menu > .menuitem { position: relative; float: none; flex: 0 0 auto; height: 24px; margin: 0 0 0 -1px; padding: 0 4px 0 0; border-top: 0; border-bottom: 0; }
#menu > .menuitem:first-child { margin-left: 0; border-left: 0; }
#menu a[aria-current="page"] { background: #00527b; }
#menu a:focus-visible { outline: 2px solid #fff; outline-offset: -3px; }
#menu .menu-dropdown { display: none; position: absolute; top: 100%; left: 0; z-index: 10001; min-width: 150px; max-height: 65vh; overflow-y: auto; padding: 4px; border: 1px solid #000; background: #3090c0; text-align: left; }
#menu .menuitem:hover > .menu-dropdown,
#menu .menuitem:focus-within > .menu-dropdown { display: block; }
#menu .menu-dropdown a,
#menu .menu-dropdown .subheader { display: block; padding: 3px 5px; font-size: 11px; line-height: 1.3; text-indent: 0; background: transparent; }
#menu .menu-dropdown a:hover,
#menu .menu-dropdown a:focus-visible { background: #00334c; }
#menu .menu-dropdown .subheader { margin-top: 5px; font-weight: bold; color: #00334c; }
#menu .menu-programs { min-width: 185px; }

.table-scroll { max-width: 100%; overflow-x: auto; }
.programs-directory > dd { margin-bottom: 26px; }
.legacy-home-hero img { max-width: 100%; height: auto; }
.documentation-toc { padding-left: 8px; list-style: none; }
.documentation-toc ol { padding-left: 24px; list-style: none; }
.documentation-format { max-width: 100%; overflow-x: auto; padding: 10px; border: 1px solid #aaa; background: #f5f5f5; }
.account-form { max-width: 580px; }
.account-form p, .account-form .account-field { display: grid; grid-template-columns: 110px minmax(0, 285px); align-items: start; gap: 4px 8px; margin: 8px 0; padding: 0; text-indent: 0; text-align: left; }
.account-form label { display: block; margin: 0; padding-top: 3px; line-height: 1.2; }
.account-form input:not([type="hidden"]):not([type="checkbox"]) { width: 100%; min-width: 0; max-width: 100%; box-sizing: border-box; border: 2px inset #006699; background: #fff; }
.account-form .helptext { display: block; grid-column: 2; font-size: 11px; overflow-wrap: anywhere; }
.account-form ul { padding-left: 20px; font-size: 12px; }
.account-form button[type="submit"] { padding: 2px; border: 2px outset #006699; background: #e0ebf0; color: #000; font: bold 13px Arial, sans-serif; }
.account-form .errorlist { color: #8a2b2b; }
.account-optional { margin: 12px 0; }
.account-optional summary { cursor: pointer; color: #006699; }
.workspace-account { max-width: 700px; }
.workspace-account > form + form, .account-removal { border-top: 1px solid #aaa; margin-top: 16px; padding-top: 12px; }
.account-removal summary { color: #006699; cursor: pointer; }
.account-checkbox { display: flex; align-items: flex-start; gap: 6px; margin: 12px 0; }
.account-checkbox input { flex: 0 0 auto; margin: 3px 0 0; }
.account-checkbox label { padding-top: 0; }
.workspace-preferences form { display: inline; }
.workspace-preferences button { border: 0; padding: 0; background: none; color: #006699; cursor: pointer; font: inherit; }
.workspace-preferences button:hover, .workspace-preferences button:focus-visible { text-decoration: underline; }
body[data-fixed-width="true"] #page { width: 800px; max-width: 100%; box-sizing: border-box; }
.workspace-authentication { display: grid; grid-template-columns: repeat(2, minmax(0, 1fr)); gap: 24px; padding: 12px 20px; border-top: 3px solid #888; border-bottom: 3px solid #888; }
.workspace-authentication > section + section { border-left: 1px solid #000; padding-left: 24px; }

@media (max-width: 680px) {
  #page { min-width: 0; }
  #page_header { display: flex; align-items: start; height: auto; min-height: 64px; }
  #page_header > a:first-child { width: 28%; }
  #page_header > a:last-child { width: 72%; }
  #page_header img { max-width: 100%; height: auto; float: none; }
  #page_footer > table tr { display: grid; grid-template-columns: repeat(2, minmax(0, 1fr)); gap: 12px; }
  #page_footer > table td { width: auto !important; }
  #page_footer img { max-width: 100%; height: auto; }
  #page_content .legacy-callout { width: auto; margin: 18px 0; }
  .table-scroll > table { min-width: 620px; }
  .workspace-authentication { grid-template-columns: minmax(0, 1fr); padding: 12px 0; }
  .workspace-authentication > section + section { border-left: 0; border-top: 1px solid #aaa; padding: 12px 0 0; }
}

.platform-credit {
  display: flex;
  flex-wrap: wrap;
  align-items: center;
  justify-content: center;
  gap: 12px;
  padding: 12px 16px;
  background: #fff;
  color: #004466;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-size: 12px;
}

.platform-credit img {
  display: block;
  width: 120px;
  height: auto;
}

.platform-credit p {
  margin: 0;
  text-indent: 0;
  text-align: left;
}

.page-messages {
  margin: 12px 0 18px 0;
}

.message {
  margin-bottom: 8px;
  padding: 8px 12px;
  border: 1px solid #7aa0b7;
  background: #eef5f9;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
}

.message-success {
  border-color: #6b9f59;
  background: #edf7e8;
}

.message-warning,
.form-errors,
.status-error {
  border: 1px solid #c27e46;
  background: #fff3df;
  color: #7d3b00;
  padding: 10px 12px;
  margin: 10px 0;
}

.legacy-home-hero {
  clear: both;
  margin-bottom: 18px;
}

.legacy-home-heading {
  color: #005580;
  font: bold 24px Arial, Verdana, Helvetica, FreeSans, sans-serif;
  text-align: center;
}
.legacy-callout .platform-note { display: block; padding: 8px 16px; }

/* Navigation dimensions are shared by every page. */
#menu > .menu-compact { width: 70px; }
#menu > .menu-analysis { width: 111px; }
#menu > .menu-blast { width: 141px; }
#menu > .menu-tools { width: 112px; }
#menu > .menu-workspace { width: 95px; }
#menu > .menu-documentation { width: 87px; }
#menu > .menuitem > a { display: block; width: inherit; height: 24px; margin-bottom: 1px; }
.footer-partners, .workflow-header-table { width: 100%; border-collapse: collapse; }
.footer-partners td { text-align: left; vertical-align: top; }
.footer-partners .partner-genopole { width: 30%; }
.footer-partners .partner-cnrs { width: 25%; }
.footer-partners .partner-ibisa { width: 25%; text-align: center; vertical-align: middle; }
.footer-partners .partner-montpellier { width: 20%; text-align: right; }

.editor-frame { width: 100%; height: 760px; border: 1px solid #aaa; }
.editor-frame--alignment { height: 720px; border-color: #999; }

.legacy-callout {
  margin-top: 24px;
  margin-bottom: 24px;
  margin-left: 20%;
  padding: 8px;
  width: 60%;
  background-color: #e0e0e0;
  border: 1px dashed #000000;
  text-align: left;
}

.legacy-note {
  margin: 14px 0;
  padding: 10px 12px;
  border: 1px solid #89a6b5;
  background: #edf4f8;
}

.programs-table {
  width: 100%;
}

.programs-table td,
.programs-table th {
  padding: 8px 12px;
  vertical-align: top;
}

.program-entry {
  margin-bottom: 12px;
}

.program-entry-heading {
  display: flex;
  flex-wrap: wrap;
  gap: 6px;
  align-items: center;
}

.program-badge {
  display: inline-block;
  padding: 2px 6px;
  border: 1px solid #587f99;
  background: #ddebf3;
  color: #12384c;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-size: 10px;
  font-weight: bold;
  text-transform: uppercase;
}

.program-badge-covered,
.program-badge-replacement {
  background: #fff3df;
  border-color: #c27e46;
  color: #7d3b00;
}

.program-badge-planned,
.program-badge-retired {
  background: #f3f3f3;
  border-color: #a2a2a2;
  color: #505050;
}

.program-note {
  margin-top: 3px;
  color: #4a6474;
  font-size: 11px;
  line-height: 1.35;
}

.miniworkflow-modern {
  min-width: 360px;
}

#wf_with_gblocks {
  display: block;
}

#wf_no_gblocks {
  display: none;
}

.miniworkflow-steps {
  display: flex;
  gap: 10px;
  list-style: none;
  margin: 0;
  padding: 0;
  justify-content: center;
}

.miniworkflow-step {
  min-width: 92px;
  padding: 5px 8px;
  border: 1px solid #7a9db4;
  background: #e7f0f4;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-size: 12px;
  text-align: center;
}

.miniworkflow-step.active {
  border-color: #0a6f9f;
  background: #bfe2f1;
  font-weight: bold;
}

.legacy-form {
  margin-top: 12px;
}

.legacy-form-section {
  margin-bottom: 18px;
  padding: 12px 14px;
  border: 1px solid #aac0cc;
  background: #f7fbfd;
}

.legacy-form-grid {
  display: grid;
  gap: 14px;
  margin: 12px 0;
}

.legacy-form-grid.two-columns {
  grid-template-columns: repeat(2, minmax(0, 1fr));
}

.legacy-form-grid.three-columns {
  grid-template-columns: repeat(3, minmax(0, 1fr));
}

.legacy-form-row {
  margin: 10px 0;
}

.legacy-form label {
  display: block;
  margin-bottom: 6px;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-weight: bold;
}

.legacy-form input[type="text"],
.legacy-form input[type="email"],
.legacy-form input[type="number"],
.legacy-form input[type="file"],
.legacy-form textarea,
.legacy-form select {
  width: 100%;
  box-sizing: border-box;
}

.legacy-form-checkboxes {
  display: flex;
  gap: 18px;
  flex-wrap: wrap;
  margin-top: 12px;
}

.legacy-form-checkboxes label {
  display: inline-flex;
  align-items: center;
  gap: 6px;
  margin-bottom: 0;
}

.advanced-setup-block .checkbox label,
.advanced-run-options .radio label {
  display: inline;
  margin-bottom: 0;
  font-weight: normal;
}

.advanced-run-options .radio {
  display: inline-flex;
  align-items: center;
  gap: 6px;
}

.run-option-spacer {
  margin-right: 64px;
}

.legacy-form-toggle {
  margin: 8px 0;
}

.toggle-link {
  border: 0;
  background: transparent;
  color: #006699;
  cursor: pointer;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-size: 14px;
  text-decoration: underline;
}

.toggle-panel {
  margin: 10px 0 14px 0;
}

.form-help {
  color: #4b6675;
  font-size: 12px;
  padding-top: 4px;
}

.field-errors ul {
  margin: 4px 0 0 18px;
  color: #8a2b2b;
}

.field-errors {
  color: #8a2b2b;
  font-size: 12px;
  margin-top: 4px;
}

.legacy-badge-cell {
  display: flex;
  align-items: end;
}

.advanced-legacy-form textarea {
  max-width: 100%;
}

.advanced-inline-label {
  margin-bottom: 6px;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-weight: bold;
}

.advanced-divider {
  margin: 0;
  border: 0;
  border-top: 1px solid #c8d7df;
}

.advanced-names-table {
  border: 0;
  border-collapse: collapse;
  width: auto;
}

.advanced-names-table td {
  padding: 4px 8px 4px 0;
  vertical-align: top;
}

.legacy-form-toggle-inline {
  display: inline-block;
}

.advanced-checkbox-cell {
  display: flex;
  align-items: end;
}

.advanced-inline-checkbox {
  display: inline-flex;
  align-items: center;
  gap: 6px;
  font-weight: normal;
}

.advanced-vertical-checkboxes {
  flex-direction: column;
  align-items: start;
  gap: 8px;
}

.status-card {
  border: 1px solid #7ea0b4;
  background: #f7fbfd;
  padding: 14px 16px;
}

.status-card-header {
  display: flex;
  justify-content: space-between;
  gap: 16px;
  align-items: start;
}

.status-card-header h2 {
  margin: 0 0 4px 0;
}

.status-pill {
  display: inline-block;
  padding: 4px 9px;
  border: 1px solid #587f99;
  background: #ddebf3;
  color: #12384c;
  font-family: Arial, Verdana, Helvetica, FreeSans, sans-serif;
  font-size: 12px;
  font-weight: bold;
  white-space: nowrap;
}

.status-pill-ready,
.status-completed {
  background: #dff0d8;
  border-color: #7ea36e;
  color: #215b20;
}

.status-running,
.status-analyzing,
.status-postprocessing,
.status-email_verification,
.status-queued,
.status-pending,
.status-submitted,
.status-preparing,
.status-syncing {
  background: #fff7cf;
  border-color: #c6b360;
  color: #6a5800;
}

.status-error,
.status-timeout,
.status-expired {
  background: #f8dfdf;
  border-color: #b96f6f;
  color: #732222;
}

.status-log-excerpt {
  margin: 12px 0 0 0;
  padding: 12px;
  border: 1px solid #d4e1e8;
  background: #ffffff;
  color: #233844;
  font-family: "Courier New", Courier, monospace;
  font-size: 12px;
  line-height: 1.45;
  white-space: pre-wrap;
}

.status-alert {
  margin: 12px 0;
  padding: 12px 14px;
  border: 1px solid #b9cbd7;
  background: #eef5f9;
  color: #183442;
}

.status-alert-title {
  margin-bottom: 6px;
  font-weight: bold;
}

.status-alert-user_input {
  border-color: #c27e46;
  background: #fff3df;
  color: #7d3b00;
}

.status-alert-tide {
  border-color: #b96f6f;
  background: #f8dfdf;
  color: #732222;
}

.status-alert-system {
  border-color: #8f9fb2;
  background: #eef2f6;
  color: #33485a;
}

.status-diagnostics {
  margin-top: 10px;
}

.status-diagnostics summary {
  cursor: pointer;
  color: #005580;
  font-weight: bold;
}

.status-metadata {
  display: grid;
  grid-template-columns: repeat(2, minmax(0, 1fr));
  gap: 10px 18px;
  margin: 16px 0;
}

.status-metadata div {
  padding: 8px 10px;
  border: 1px solid #cfdee7;
  background: #ffffff;
}

.status-metadata dt {
  margin: 0 0 4px 0;
  font-weight: bold;
}

.status-metadata dd {
  margin: 0;
}

.results-frame-wrapper {
  margin-top: 16px;
}

.results-frame {
  width: 100%;
  min-height: 760px;
  border: 1px solid #7ea0b4;
  background: #ffffff;
}

.jalview-embed-shell {
  min-height: 720px;
  padding: 8px;
  border: 1px solid #7ea0b4;
  background: #f7fbfd;
  overflow: auto;
}

.jalview-console {
  display: none;
}

[data-conditional-hidden="true"] {
  display: none !important;
}