BioNJ (doc)

1. Overview
2. Data & Settings
3. Results

Name of the analysis:

Datatype:

Auto-detect

Amino acids

Nucleotides

Upload your alignment (FASTA, Phylip, Clustal, EMBL or NEXUS format) or distance matrix (Phylip or NEXUS format) from a file:

Or paste it here

Distance matrices: PHYLIP (square or triangular) or NEXUS DISTANCES, up to 500 taxa. Substitution model, gamma, ratio and bootstrap settings are ignored for supplied distances.

Settings

Number of bootstraps:

Model:

Gamma distribution parameter (amino acids):

Transition/transversion ratio (nucleic acids):

Sequence distances use PHYLIP Dnadist or Protdist; supplied distances are used directly. BioNJ runs without topology refinement. Bootstrap analyses provide a consensus with support percentages and a separate tree with estimated branch lengths.

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Email (optional):

Analysis files are retained for 30 days from submission. Download your results before the expiration date. Retention and deletion.

phylogeny.atgc-montpellier.fr is provided by the ATGC bioinformatics platform.