IQ-TREE 3 (doc)

1. Overview
2. Data & Settings
3. Results

Maximum-likelihood inference and ModelFinder model selection. Program documentation.

Upload or paste FASTA, PHYLIP, Clustal, NEXUS, EMBL or GenBank sequences. Up to 200 sequences, 6000 nucleotide or 2000 amino-acid positions. Sequences must already be aligned.

This service runs IQ-TREE 3. Automatic model uses ModelFinder. Ultrafast bootstrap and SH-aLRT require 1000 replicates when enabled.

Name of the analysis:

Upload your alignment (FASTA, Phylip, Clustal, EMBL or NEXUS format) from a file:

Or paste it here

Settings

Sequence type:

Model:

Ultrafast bootstrap replicates (0 or 1000):

Seed:

Outgroup:

SH-aLRT replicates (0 or 1000):

Starting tree:

To receive the results by e-mail, enter your address(es):

Email (optional):

Analysis files are retained for 30 days from submission. Download your results before the expiration date. Retention and deletion.

phylogeny.atgc-montpellier.fr is provided by the ATGC bioinformatics platform.